BamTools
2.5.2
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▼CAlignmentSortBase | |
CBamTools::Algorithms::Sort::ByName | Function object for comparing alignments by name |
CBamTools::Algorithms::Sort::ByPosition | Function object for comparing alignments by position |
CBamTools::Algorithms::Sort::ByTag< T > | Function object for comparing alignments by tag value |
CBamTools::Algorithms::Sort::Unsorted | Placeholder function object |
CBamTools::BamAlignment | The main BAM alignment data structure |
CBamTools::BamIndex | Provides methods for generating & loading BAM index files |
CBamTools::BamMultiReader | Convenience class for reading multiple BAM files |
CBamTools::BamReader | Provides read access to BAM files |
CBamTools::BamRegion | Represents a sequential genomic region |
CBamTools::BamWriter | Provides write access for generating BAM files |
CBamTools::CigarOp | Represents a CIGAR alignment operation |
CBamTools::CustomHeaderTag | |
CBamTools::IBamIODevice | |
CBamTools::RefData | Represents a reference sequence entry |
CBamTools::SamHeader | Represents the SAM-formatted text header that is part of the BAM file header |
CBamTools::SamProgram | Represents a SAM program record |
CBamTools::SamProgramChain | Sorted container "chain" of SamProgram records |
CBamTools::SamReadGroup | Represents a SAM read group entry |
CBamTools::SamReadGroupDictionary | Container of SamReadGroup entries |
CBamTools::SamSequence | Represents a SAM sequence entry |
CBamTools::SamSequenceDictionary | Container of SamSequence entries |
CBamTools::Algorithms::Sort | Provides classes & methods related to sorting BamAlignments |